Each step hands the work to the next, so you never switch tools and never wait at a terminal.
Open Ebonex
It runs in your browser on any computer. Continue with Google and your workspace, your cloud computer and your AI models are ready. No install, no keys to paste.
WorkspaceReady
My ComputerOn
AI modelsIncluded
Ask in your own words
Type or talk, in Arabic or English. The voice assistant keeps your hands free at the bench. You see the plan and its exact cost, and nothing heavy runs before you approve it.
“Find the hotspot residues between barnase and barstar.”
Get the result
It reads the papers, runs the job on a cloud GPU and returns one folder: structures in 3D, numbered figures and tables, cited references and a report in PDF and Word.
3D structureMol*
Schreiber & Fersht, 1995cited
report.pdfReady
What you get
A whole research group, in one tab.
Everything below is in your account the moment you sign in.
Docking & simulationHADDOCK3 docking and GROMACS or OpenMM molecular dynamics, prepared, run and analysed for you.3D results in Mol*Poses in the pocket, surfaces and interactions, driven by the assistant and exported at publication resolution.GPU on demandPick a card, see the hours and the price, approve once. Paid plans include free GPU hours every month.My ComputerA Linux computer of your own with files, a terminal and a real browser that remembers your logins. Install the software you like.Super BrainYour papers, protocols and past results, linked into a memory the assistant actually reads before it answers.Agent teamsSeveral agents split one task — search, run, check, write — and hand you a single answer.SchedulingLong jobs and weekly literature scans run while you sleep, and the result is waiting in the morning.Scientific write-upAbstract, Methods, Results, Discussion, Limitations, References and an AI statement — in PDF and Word.
Built on trusted tools
The open tools science already trusts.
Ebonex connects them for you, so you ask once and it picks the right one.
Mol*Interactive 3D viewer for proteins and molecules.
HADDOCK3Docks proteins and other molecules to predict how they bind.
GROMACS & OpenMMMolecular dynamics, from protein-only to membrane systems.
RDKitChemistry toolkit for reading molecules and computing their properties.
Protein Data BankPublic archive of experimentally solved 3D structures.
AlphaFold DBPredicted 3D structures for millions of proteins.
PubMedSearch engine for biomedical and life-science papers.
arXivOpen archive of scientific preprints.
Model Context ProtocolOpen standard for plugging new tools into the assistant.
Private by design
Your unpublished research stays yours.
Your workspace is yours alone, and nothing heavy happens without your word.
Your own isolated workspaceFiles, results and your library live in storage only your account can reach.
You approve every actionPlans, commands and every paid GPU hour wait for your yes.
Never used for trainingYour data trains no model and is never sold or shared.
FAQ
Questions, answered.
Still unsure? Open Ebonex and ask it yourself.
What is Ebonex?
Ebonex is one AI assistant for researchers. It reads scientific papers, runs analysis and molecular docking on cloud GPUs, schedules long jobs, shows results in an interactive 3D viewer, and writes the cited report. It runs in your browser.
Do I need to install anything?
No. Ebonex runs in your browser on any computer — Windows, macOS, Linux or a tablet. Open it, sign in with Google and start. There is nothing to download and no system requirements.
Who is Ebonex for?
Researchers, graduate students, university labs and biotech or pharma teams working in computational chemistry, structural biology and drug discovery.
Who can see my research?
Only you. Each account gets its own isolated workspace with its own storage. Nothing is shared with other accounts, and your data is never used to train models.
Do I need my own API key?
No. Managed AI models are included with your account. You can also bring your own key.
Which tools does Ebonex run?
Molecular docking with HADDOCK3, molecular dynamics with GROMACS and OpenMM, structure preparation, the Mol* 3D viewer, literature search on PubMed and arXiv, and any tool or skill you install from the Marketplace.
How does GPU pricing work?
Before a heavy job runs, Ebonex shows the card, the estimated hours and the price, and waits for you to approve. Paid plans include free GPU hours each month; beyond those you top up credit and pay only for the hours you use.
What is My Computer?
A Linux computer of your own inside Ebonex, with a file manager, a terminal and a real browser that keeps your logins between sessions. The assistant can install and drive scientific software on it for you.
Is Ebonex available in Arabic?
Yes. You can talk to Ebonex in Arabic or English, and the app supports right-to-left layout.
Is there a free plan?
Yes. Every new account starts with a 14-day free trial on Lite limits. No card is needed to start.
Can my lab work together?
Yes. The Team plan, priced per seat, adds a shared library, agent teams and an admin panel for members and billing.
How do I get started?
Open Ebonex, continue with Google and ask your first research question. Your workspace is ready in seconds.
Ask your first research question today.
Runs in your browser. 14-day free trial, no card to start.
