A docking study, a molecular dynamics study, and a written paper. Each one starts the same way: you say what you want in your own words, EBONEX proposes the plan, you approve it, and the finished work comes back in one folder.
You want to know how a molecule sits in a protein, or which of several molecules prefers it. You bring the protein and the molecules; EBONEX does the rest.
A protein — its PDB ID, or your own structure file — and the molecules you want docked. A molecule can be a plain name; if you know its structure, give that instead, and say which form you mean when it has more than one.
One message is enough. Name the protein, name the molecules, and say what you are trying to find out.
It reads each structure, finds the pocket that matters, and chooses the kind of docking the question needs — then tells you which it chose and why. Two proteins are still one study, one estimate and one approval.
You want to know whether something holds together: a fold, a loop, a bound molecule, a mutation, a protein sitting in its membrane. You bring the structure; EBONEX plans the simulation.
A structure — its PDB ID, or your own file. A ligand only if the question is about one: it comes with the structure itself, or as the pose from a docking study you already ran here. Simulation tests a pose; it does not go looking for one.
Say what you want to learn. You never have to name a force field, a water model or an engine.
It reads the structure and your question, builds the whole system around it, chooses the protocol and gives its one-line reason. Then one estimate for the study, and it starts only after you agree.
You have the work; now it has to read like a paper. EBONEX writes it from your own results, in the shape a journal desk expects, and checks every reference before it hands it over.
Your topic, and the data or results the paper reports — your own files, or a study you already ran here. If you know the journal and the article type, have them ready; if not, EBONEX asks.
Point at the results and say what the paper is for.
It agrees the frame with you in one short message — the journal, the article type, the one main finding — then writes the manuscript from your results, never from numbers it does not have, and checks itself before you see it.
If you would rather think it through than hand it over, say so. EBONEX AI will plan with you and keep its hands still.
Write “plan this study with me” in the chat. EBONEX AI writes the plan out, you correct it, and it runs only when you approve.
No. A study shows its estimate once, before it starts, and starts only after you agree. See pricing for what a plan includes.
No. EBONEX AI chooses it from your question and the structures, and states its reason in one line so you can disagree with it.
Into one study folder in your workspace, which you will find again in your Library and your results — report, figures, tables, raw results and references together.
Yes. Ask in Arabic or English, typed or spoken, and EBONEX AI answers in the language you used.
You will be told, with the references behind the correction, before any study is designed around it.
Your turn
Bring a protein, a structure or a folder of results. You get the plan first, and then the study, finished.